J4_5HD1_007
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HD1_007 not in the Motif Atlas
- Homologous match to J4_9DFE_007
- Geometric discrepancy: 0.041
- The information below is about J4_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HD1|1|1A|G|1802
5HD1|1|1A|A|1803
5HD1|1|1A|C|1804
5HD1|1|1A|U|1805
5HD1|1|1A|G|1806
*
5HD1|1|1A|C|1818
5HD1|1|1A|A|1819
5HD1|1|1A|C|1820
5HD1|1|1A|A|1821
5HD1|1|1A|G|1822
*
5HD1|1|1A|C|1857
5HD1|1|1A|G|1858
5HD1|1|1A|A|1859
5HD1|1|1A|C|1860
*
5HD1|1|1A|G|1996
5HD1|1|1A|U|1997
5HD1|1|1A|A|1998
5HD1|1|1A|A|1999
5HD1|1|1A|C|2000
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: