J4_5HKV_002

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HKV_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.081

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5HKV|1|X|C|340
5HKV|1|X|G|341
5HKV|1|X|A|342
5HKV|1|X|A|343
5HKV|1|X|U|344
*
5HKV|1|X|A|359
5HKV|1|X|A|360
5HKV|1|X|U|361
5HKV|1|X|C|362
*
5HKV|1|X|G|366
5HKV|1|X|A|367
5HKV|1|X|A|368
*
5HKV|1|X|U|380
5HKV|1|X|G|381
5HKV|1|X|U|382
5HKV|1|X|A|383
5HKV|1|X|G|384

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24