J4_5HKV_009

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HKV_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.0587

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5HKV|1|X|G|2670
5HKV|1|X|A|2671
5HKV|1|X|G|2672
5HKV|1|X|C|2673
*
5HKV|1|X|G|2701
5HKV|1|X|A|2702
5HKV|1|X|C|2703
*
5HKV|1|X|G|2758
5HKV|1|X|G|2759
5HKV|1|X|A|2760
5HKV|1|X|C|2761
5HKV|1|X|G|2762
*
5HKV|1|X|C|2796
5HKV|1|X|C|2797
5HKV|1|X|C|2798

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14