J4_5HL7_009

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HL7_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.0875

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5HL7|1|X|G|2670
5HL7|1|X|A|2671
5HL7|1|X|G|2672
5HL7|1|X|C|2673
*
5HL7|1|X|G|2701
5HL7|1|X|A|2702
5HL7|1|X|C|2703
*
5HL7|1|X|G|2758
5HL7|1|X|G|2759
5HL7|1|X|A|2760
5HL7|1|X|C|2761
5HL7|1|X|G|2762
*
5HL7|1|X|C|2796
5HL7|1|X|C|2797
5HL7|1|X|C|2798

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14