J4_5HR6_002

3D structure

PDB id

5HR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray crystal structure of C118A RlmN with cross-linked tRNA purified from Escherichia coli

Experimental method

X-RAY DIFFRACTION

Resolution

2.88 Å

Loop

Sequence

UUCG*CAC*GUAACA*UA

Length

15 nucleotides

Bulged bases

5HR6|1|D|U|7, 5HR6|1|D|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HR6_002 not in the Motif Atlas

Homologous match to J4_5HR6_001

Geometric discrepancy: 0.066

The information below is about J4_5HR6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5HR6|1|D|U|6
5HR6|1|D|U|7
5HR6|1|D|C|8
5HR6|1|D|G|9
*
5HR6|1|D|C|25
5HR6|1|D|A|26
5HR6|1|D|C|27
*
5HR6|1|D|G|43
5HR6|1|D|U|44
5HR6|1|D|A|45
5HR6|1|D|A|46
5HR6|1|D|C|47
5HR6|1|D|A|48
*
5HR6|1|D|U|64
5HR6|1|D|A|65

Current chains

Chain D

tRNA Glu

Nearby chains

Chain B

RlmN methylase