J4_5IB7_006

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

5IB7|1|14|G|1271, 5IB7|1|14|A|1272, 5IB7|1|14|U|1273, 5IB7|1|14|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_006 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0566

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5IB7|1|14|C|1270
5IB7|1|14|G|1271
5IB7|1|14|A|1272
5IB7|1|14|U|1273
5IB7|1|14|A|1274
5IB7|1|14|A|1275
5IB7|1|14|A|1276
*
5IB7|1|14|U|1294
5IB7|1|14|C|1295
*
5IB7|1|14|G|1645
5IB7|1|14|C|1646
5IB7|1|14|G|1647
5IB7|1|14|C|1648
*
5IB7|1|14|G|2009
5IB7|1|14|G|2010

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32