J4_5IB7_010

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_010 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0559

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5IB7|1|14|G|1772
5IB7|1|14|A|1773
5IB7|1|14|C|1774
5IB7|1|14|U|1775
5IB7|1|14|G|1776
*
5IB7|1|14|C|1788
5IB7|1|14|A|1789
5IB7|1|14|C|1790
5IB7|1|14|A|1791
5IB7|1|14|G|1792
*
5IB7|1|14|C|1827
5IB7|1|14|G|1828
5IB7|1|14|A|1829
5IB7|1|14|C|1830
*
5IB7|1|14|G|1975
5IB7|1|14|U|1976
5IB7|1|14|A|1977
5IB7|1|14|A|1978
5IB7|1|14|C|1979

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA