J4_5IB7_027
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAG(7MG)UCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5IB7|1|2K|4SU|8, 5IB7|1|2K|U|48, 5IB7|1|2K|C|49
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IB7_027 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.0827
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5IB7|1|2K|G|7
5IB7|1|2K|4SU|8
5IB7|1|2K|G|9
5IB7|1|2K|G|10
*
5IB7|1|2K|C|26
5IB7|1|2K|G|27
5IB7|1|2K|U|28
*
5IB7|1|2K|A|44
5IB7|1|2K|A|45
5IB7|1|2K|G|46
5IB7|1|2K|7MG|47
5IB7|1|2K|U|48
5IB7|1|2K|C|49
5IB7|1|2K|G|50
*
5IB7|1|2K|C|66
5IB7|1|2K|C|67
Current chains
- Chain 2K
- tRNAfMet
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1K
- Transfer RNA; tRNA
- Chain 4I
- 30S ribosomal protein S13
- Chain 88
- 50S ribosomal protein L16
- Chain I8
- 50S ribosomal protein L27
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