J4_5IB8_005

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB8_005 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0739

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|C|297
5IB8|1|14|G|298
5IB8|1|14|A|299
5IB8|1|14|A|300
5IB8|1|14|G|301
*
5IB8|1|14|C|316
5IB8|1|14|G|317
5IB8|1|14|C|318
5IB8|1|14|C|319
*
5IB8|1|14|G|323
5IB8|1|14|A|324
5IB8|1|14|G|325
*
5IB8|1|14|C|337
5IB8|1|14|G|338
5IB8|1|14|U|339
5IB8|1|14|A|340
5IB8|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24