J4_5IB8_011

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

5IB8|1|14|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB8_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0702

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|U|1833
5IB8|1|14|U|1834
5IB8|1|14|G|1835
*
5IB8|1|14|C|1905
5IB8|1|14|G|1906
*
5IB8|1|14|C|1924
5IB8|1|14|C|1925
5IB8|1|14|U|1926
5IB8|1|14|A|1927
5IB8|1|14|A|1928
5IB8|1|14|G|1929
5IB8|1|14|G|1930
5IB8|1|14|U|1931
5IB8|1|14|A|1932
5IB8|1|14|G|1933
*
5IB8|1|14|C|1967
5IB8|1|14|G|1968
5IB8|1|14|A|1969
5IB8|1|14|A|1970
5IB8|1|14|A|1971
5IB8|1|14|A|1972

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA