J4_5IB8_031
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- UUAG*CAG*UUGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 5IB8|1|3L|U|8, 5IB8|1|3L|U|47, 5IB8|1|3L|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IB8_031 not in the Motif Atlas
- Homologous match to J4_5E81_030
- Geometric discrepancy: 0.1213
- The information below is about J4_5E81_030
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58434.1
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IB8|1|3L|U|7
5IB8|1|3L|U|8
5IB8|1|3L|A|9
5IB8|1|3L|G|10
*
5IB8|1|3L|C|25
5IB8|1|3L|A|26
5IB8|1|3L|G|27
*
5IB8|1|3L|U|43
5IB8|1|3L|U|44
5IB8|1|3L|G|45
5IB8|1|3L|G|46
5IB8|1|3L|U|47
5IB8|1|3L|C|48
5IB8|1|3L|G|49
*
5IB8|1|3L|C|65
5IB8|1|3L|A|66
Current chains
- Chain 3L
- tRNALys
Nearby chains
- Chain 2A
- 30S ribosomal protein S11
- Chain 62
- 30S ribosomal protein S7
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