J4_5IBB_024
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5IBB|1|1H|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IBB_024 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0689
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IBB|1|1H|U|1833
5IBB|1|1H|U|1834
5IBB|1|1H|G|1835
*
5IBB|1|1H|C|1905
5IBB|1|1H|G|1906
*
5IBB|1|1H|C|1924
5IBB|1|1H|C|1925
5IBB|1|1H|U|1926
5IBB|1|1H|A|1927
5IBB|1|1H|A|1928
5IBB|1|1H|G|1929
5IBB|1|1H|G|1930
5IBB|1|1H|U|1931
5IBB|1|1H|A|1932
5IBB|1|1H|G|1933
*
5IBB|1|1H|C|1967
5IBB|1|1H|G|1968
5IBB|1|1H|A|1969
5IBB|1|1H|A|1970
5IBB|1|1H|A|1971
5IBB|1|1H|A|1972
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2K
- Transfer RNA; tRNA
Coloring options: