J4_5IMQ_002
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAUAG*CAGGG*CCCGUGUCCUU*GAGUCC
- Length
- 28 nucleotides
- Bulged bases
- 5IMQ|1|5|U|8, 5IMQ|1|5|U|47, 5IMQ|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMQ|1|5|G|5
5IMQ|1|5|G|6
5IMQ|1|5|A|7
5IMQ|1|5|U|8
5IMQ|1|5|A|9
5IMQ|1|5|G|10
*
5IMQ|1|5|C|25
5IMQ|1|5|A|26
5IMQ|1|5|G|27
5IMQ|1|5|G|28
5IMQ|1|5|G|29
*
5IMQ|1|5|C|41
5IMQ|1|5|C|42
5IMQ|1|5|C|43
5IMQ|1|5|G|44
5IMQ|1|5|U|45
5IMQ|1|5|G|46
5IMQ|1|5|U|47
5IMQ|1|5|C|48
5IMQ|1|5|C|49
5IMQ|1|5|U|50
5IMQ|1|5|U|51
*
5IMQ|1|5|G|63
5IMQ|1|5|A|64
5IMQ|1|5|G|65
5IMQ|1|5|U|66
5IMQ|1|5|C|67
5IMQ|1|5|C|68
Current chains
- Chain 5
- E site tRNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S11
- Chain Z
- 50S ribosomal protein L1
- Chain x
- 50S ribosomal protein L33
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