J4_5IMQ_005
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 5IMQ|1|A|A|572, 5IMQ|1|A|G|576, 5IMQ|1|A|A|815, 5IMQ|1|A|G|818, 5IMQ|1|A|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMQ|1|A|C|569
5IMQ|1|A|G|570
5IMQ|1|A|U|571
5IMQ|1|A|A|572
5IMQ|1|A|A|573
5IMQ|1|A|A|574
5IMQ|1|A|G|575
5IMQ|1|A|G|576
5IMQ|1|A|G|577
*
5IMQ|1|A|C|764
5IMQ|1|A|G|765
5IMQ|1|A|A|766
5IMQ|1|A|A|767
5IMQ|1|A|A|768
5IMQ|1|A|G|769
*
5IMQ|1|A|C|810
5IMQ|1|A|C|811
5IMQ|1|A|C|812
5IMQ|1|A|U|813
5IMQ|1|A|A|814
5IMQ|1|A|A|815
5IMQ|1|A|A|816
5IMQ|1|A|C|817
5IMQ|1|A|G|818
5IMQ|1|A|A|819
5IMQ|1|A|U|820
5IMQ|1|A|G|821
*
5IMQ|1|A|C|879
5IMQ|1|A|C|880
5IMQ|1|A|G|881
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S12
- Chain S
- 30S ribosomal protein S15
- Chain U
- 30S ribosomal protein S17
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