J4_5IMQ_012

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAGGU*GCCUGAC*GGG*CGG

Length

20 nucleotides

Bulged bases

5IMQ|1|D|A|2286, 5IMQ|1|D|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|2285
5IMQ|1|D|A|2286
5IMQ|1|D|A|2287
5IMQ|1|D|A|2288
5IMQ|1|D|G|2289
5IMQ|1|D|G|2290
5IMQ|1|D|U|2291
*
5IMQ|1|D|G|2341
5IMQ|1|D|C|2342
5IMQ|1|D|C|2343
5IMQ|1|D|U|2344
5IMQ|1|D|G|2345
5IMQ|1|D|A|2346
5IMQ|1|D|C|2347
*
5IMQ|1|D|G|2370
5IMQ|1|D|G|2371
5IMQ|1|D|G|2372
*
5IMQ|1|D|C|2381
5IMQ|1|D|G|2382
5IMQ|1|D|G|2383

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L18

Chain s

50S ribosomal protein L27

Chain x

50S ribosomal protein L33

Chain z

50S ribosomal protein L35