J4_5IMQ_013

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGGC*GACGC*GCGGAAG*CGCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|2642
5IMQ|1|D|G|2643
5IMQ|1|D|G|2644
5IMQ|1|D|G|2645
5IMQ|1|D|C|2646
*
5IMQ|1|D|G|2674
5IMQ|1|D|A|2675
5IMQ|1|D|C|2676
5IMQ|1|D|G|2677
5IMQ|1|D|C|2678
*
5IMQ|1|D|G|2729
5IMQ|1|D|C|2730
5IMQ|1|D|G|2731
5IMQ|1|D|G|2732
5IMQ|1|D|A|2733
5IMQ|1|D|A|2734
5IMQ|1|D|G|2735
*
5IMQ|1|D|C|2769
5IMQ|1|D|G|2770
5IMQ|1|D|C|2771
5IMQ|1|D|C|2772

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain f

50S ribosomal protein L13

Chain g

50S ribosomal protein L14