J4_5IMQ_018
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5IMQ|1|D|G|1271, 5IMQ|1|D|A|1272, 5IMQ|1|D|U|1273, 5IMQ|1|D|A|1275, 5IMQ|1|D|G|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IMQ_018 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.1869
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5IMQ|1|D|C|1270
5IMQ|1|D|G|1271
5IMQ|1|D|A|1272
5IMQ|1|D|U|1273
5IMQ|1|D|A|1274
5IMQ|1|D|A|1275
5IMQ|1|D|A|1276
*
5IMQ|1|D|U|1294
5IMQ|1|D|C|1295
*
5IMQ|1|D|G|1645
5IMQ|1|D|C|1646
5IMQ|1|D|G|1647
5IMQ|1|D|C|1648
*
5IMQ|1|D|G|2009
5IMQ|1|D|G|2010
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain j
- 50S ribosomal protein L17
- Chain o
- 50S ribosomal protein L22
- Chain w
- 50S ribosomal protein L32
Coloring options: