J4_5IMQ_019

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GCCAGAAG*CGUGGUGG*CC

Length

21 nucleotides

Bulged bases

5IMQ|1|D|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|1444
5IMQ|1|D|A|1444|||A
5IMQ|1|D|C|1445
*
5IMQ|1|D|G|1466
5IMQ|1|D|C|1467
5IMQ|1|D|C|1468
5IMQ|1|D|A|1469
5IMQ|1|D|G|1470
5IMQ|1|D|A|1471
5IMQ|1|D|A|1472
5IMQ|1|D|G|1473
*
5IMQ|1|D|C|1518
5IMQ|1|D|G|1519
5IMQ|1|D|U|1520
5IMQ|1|D|G|1521
5IMQ|1|D|G|1522
5IMQ|1|D|U|1523
5IMQ|1|D|G|1524
5IMQ|1|D|G|1525
*
5IMQ|1|D|C|1546
5IMQ|1|D|C|1547

Current chains

Chain D

23S ribosomal RNA

Nearby chains