J4_5IMQ_020

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CGG*UCCUAAGGUAG*CGAAAA

Length

23 nucleotides

Bulged bases

5IMQ|1|D|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|U|1833
5IMQ|1|D|U|1834
5IMQ|1|D|G|1835
*
5IMQ|1|D|C|1905
5IMQ|1|D|G|1906
5IMQ|1|D|G|1907
*
5IMQ|1|D|U|1923
5IMQ|1|D|C|1924
5IMQ|1|D|C|1925
5IMQ|1|D|U|1926
5IMQ|1|D|A|1927
5IMQ|1|D|A|1928
5IMQ|1|D|G|1929
5IMQ|1|D|G|1930
5IMQ|1|D|U|1931
5IMQ|1|D|A|1932
5IMQ|1|D|G|1933
*
5IMQ|1|D|C|1967
5IMQ|1|D|G|1968
5IMQ|1|D|A|1969
5IMQ|1|D|A|1970
5IMQ|1|D|A|1971
5IMQ|1|D|A|1972

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2