J4_5IQR_005

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CUU*AAAUCGUAC

Length

23 nucleotides

Bulged bases

5IQR|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IQR|1|1|G|1310
5IQR|1|1|G|1311
5IQR|1|1|U|1312
5IQR|1|1|U|1313
5IQR|1|1|C|1314
*
5IQR|1|1|G|1338
5IQR|1|1|G|1339
5IQR|1|1|U|1340
5IQR|1|1|G|1341
5IQR|1|1|A|1342
5IQR|1|1|G|1343
*
5IQR|1|1|C|1404
5IQR|1|1|U|1405
5IQR|1|1|U|1406
*
5IQR|1|1|A|1596
5IQR|1|1|A|1597
5IQR|1|1|A|1598
5IQR|1|1|U|1599
5IQR|1|1|C|1600
5IQR|1|1|G|1601
5IQR|1|1|U|1602
5IQR|1|1|A|1603
5IQR|1|1|C|1604

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34