J4_5J30_006

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J30_006 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0604

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5J30|1|RA|C|297
5J30|1|RA|G|298
5J30|1|RA|A|299
5J30|1|RA|A|300
5J30|1|RA|G|301
*
5J30|1|RA|C|316
5J30|1|RA|G|317
5J30|1|RA|C|318
5J30|1|RA|C|319
*
5J30|1|RA|G|323
5J30|1|RA|A|324
5J30|1|RA|G|325
*
5J30|1|RA|C|337
5J30|1|RA|G|338
5J30|1|RA|U|339
5J30|1|RA|A|340
5J30|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24