J4_5J3C_006

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J3C_006 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0649

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5J3C|1|RA|C|297
5J3C|1|RA|G|298
5J3C|1|RA|A|299
5J3C|1|RA|A|300
5J3C|1|RA|G|301
*
5J3C|1|RA|C|316
5J3C|1|RA|G|317
5J3C|1|RA|C|318
5J3C|1|RA|C|319
*
5J3C|1|RA|G|323
5J3C|1|RA|A|324
5J3C|1|RA|G|325
*
5J3C|1|RA|C|337
5J3C|1|RA|G|338
5J3C|1|RA|U|339
5J3C|1|RA|A|340
5J3C|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24