J4_5J4B_030
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCCU*AGU
- Length
- 18 nucleotides
- Bulged bases
- 5J4B|1|2w|4SU|8, 5J4B|1|2w|U|47, 5J4B|1|2w|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4B|1|2w|A|7
5J4B|1|2w|4SU|8
5J4B|1|2w|A|9
5J4B|1|2w|G|10
*
5J4B|1|2w|C|25
5J4B|1|2w|A|26
5J4B|1|2w|G|27
*
5J4B|1|2w|C|43
5J4B|1|2w|G|44
5J4B|1|2w|U|45
5J4B|1|2w|7MG|46
5J4B|1|2w|U|47
5J4B|1|2w|C|48
5J4B|1|2w|C|49
5J4B|1|2w|U|50
*
5J4B|1|2w|A|64
5J4B|1|2w|G|65
5J4B|1|2w|U|66
Current chains
- Chain 2w
- A-site and E-site tRNAs
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
Coloring options: