J4_5J4D_005
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J4D_005 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0827
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|B|C|297
5J4D|1|B|G|298
5J4D|1|B|A|299
5J4D|1|B|A|300
5J4D|1|B|G|301
*
5J4D|1|B|C|316
5J4D|1|B|G|317
5J4D|1|B|C|318
5J4D|1|B|C|319
*
5J4D|1|B|G|323
5J4D|1|B|A|324
5J4D|1|B|G|325
*
5J4D|1|B|C|337
5J4D|1|B|G|338
5J4D|1|B|U|339
5J4D|1|B|A|340
5J4D|1|B|G|341
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L24
Coloring options: