J4_5J4D_010

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

5J4D|1|B|A|1444|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_010 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2086

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J4D|1|B|G|1444
5J4D|1|B|A|1444|||B
5J4D|1|B|C|1445
*
5J4D|1|B|G|1466
5J4D|1|B|C|1467
*
5J4D|1|B|G|1525
5J4D|1|B|G|1526
*
5J4D|1|B|C|1546|||B
5J4D|1|B|C|1547

Current chains

Chain B

25S ribosomal RNA

Nearby chains