J4_5J4D_020

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_020 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0821

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|GB|C|297
5J4D|1|GB|G|298
5J4D|1|GB|A|299
5J4D|1|GB|A|300
5J4D|1|GB|G|301
*
5J4D|1|GB|C|316
5J4D|1|GB|G|317
5J4D|1|GB|C|318
5J4D|1|GB|C|319
*
5J4D|1|GB|G|323
5J4D|1|GB|A|324
5J4D|1|GB|G|325
*
5J4D|1|GB|C|337
5J4D|1|GB|G|338
5J4D|1|GB|U|339
5J4D|1|GB|A|340
5J4D|1|GB|G|341

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain LB

50S ribosomal protein L4