J4_5J4D_021

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_021 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5038

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5J4D|1|GB|C|601
5J4D|1|GB|G|602
5J4D|1|GB|A|603
5J4D|1|GB|G|604
*
5J4D|1|GB|C|624
5J4D|1|GB|G|625
5J4D|1|GB|U|626
5J4D|1|GB|A|627
5J4D|1|GB|G|628
*
5J4D|1|GB|C|635
5J4D|1|GB|G|636
5J4D|1|GB|A|637
5J4D|1|GB|G|638
*
5J4D|1|GB|C|650
5J4D|1|GB|G|651
5J4D|1|GB|U|652
5J4D|1|GB|C|653
5J4D|1|GB|U|654
5J4D|1|GB|A|655
5J4D|1|GB|G|656

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain KC

50S ribosomal protein L35

Chain LB

50S ribosomal protein L4

Chain RB

50S ribosomal protein L15