J4_5J5B_011

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5J5B|1|CA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J5B_011 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0697

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J5B|1|CA|G|1310
5J5B|1|CA|G|1311
5J5B|1|CA|U|1312
5J5B|1|CA|U|1313
5J5B|1|CA|C|1314
*
5J5B|1|CA|G|1338
5J5B|1|CA|G|1339
5J5B|1|CA|U|1340
5J5B|1|CA|G|1341
5J5B|1|CA|A|1342
5J5B|1|CA|G|1343
*
5J5B|1|CA|C|1404
5J5B|1|CA|U|1405
*
5J5B|1|CA|A|1597
5J5B|1|CA|A|1598
5J5B|1|CA|U|1599
5J5B|1|CA|C|1600
5J5B|1|CA|G|1601
5J5B|1|CA|U|1602
5J5B|1|CA|A|1603
5J5B|1|CA|C|1604

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CU

50S ribosomal protein L23