J4_5J7L_009

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J7L_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0347

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5J7L|1|CA|C|601
5J7L|1|CA|A|602
5J7L|1|CA|A|603
5J7L|1|CA|G|604
*
5J7L|1|CA|C|624
5J7L|1|CA|G|625
5J7L|1|CA|A|626
5J7L|1|CA|A|627
5J7L|1|CA|G|628
*
5J7L|1|CA|C|635
5J7L|1|CA|G|636
5J7L|1|CA|A|637
5J7L|1|CA|G|638
*
5J7L|1|CA|C|650
5J7L|1|CA|G|651
5J7L|1|CA|U|652
5J7L|1|CA|U|653
5J7L|1|CA|A|654
5J7L|1|CA|A|655
5J7L|1|CA|G|656

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15