J4_5J7L_018

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5J7L|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|DA|C|268
5J7L|1|DA|C|269
*
5J7L|1|DA|G|370
5J7L|1|DA|A|371
5J7L|1|DA|G|372
5J7L|1|DA|U|373
5J7L|1|DA|A|374
5J7L|1|DA|G|375
*
5J7L|1|DA|U|399
5J7L|1|DA|G|400
5J7L|1|DA|A|401
5J7L|1|DA|A|402
5J7L|1|DA|U|403
5J7L|1|DA|A|404||A
5J7L|1|DA|U|405
5J7L|1|DA|G|406
*
5J7L|1|DA|C|421
5J7L|1|DA|A|422
5J7L|1|DA|A|423
5J7L|1|DA|G|424

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DY

50S ribosomal protein L28