J4_5J7L_028

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5J7L|1|DA|G|2643
5J7L|1|DA|G|2644
5J7L|1|DA|G|2645
5J7L|1|DA|C|2646
*
5J7L|1|DA|G|2674
5J7L|1|DA|A|2675
5J7L|1|DA|C|2676
*
5J7L|1|DA|G|2731
5J7L|1|DA|G|2732
5J7L|1|DA|A|2733
5J7L|1|DA|A|2734
5J7L|1|DA|G|2735
*
5J7L|1|DA|U|2769
5J7L|1|DA|G|2770
5J7L|1|DA|C|2771

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L13

Chain DL

50S ribosomal protein L14