J4_5J88_008
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J88_008 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0558
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J88|1|CA|G|297
5J88|1|CA|G|298
5J88|1|CA|A|299
5J88|1|CA|A|300
5J88|1|CA|G|301
*
5J88|1|CA|C|316
5J88|1|CA|G|317
5J88|1|CA|C|318
5J88|1|CA|G|319
*
5J88|1|CA|C|323
5J88|1|CA|A|324
5J88|1|CA|G|325
*
5J88|1|CA|C|337
5J88|1|CA|G|338
5J88|1|CA|U|339
5J88|1|CA|A|340
5J88|1|CA|C|341
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CE
- 50S ribosomal protein L4
- Chain CV
- 50S ribosomal protein L24
Coloring options: