J4_5J8A_015

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5J8A|1|CA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8A_015 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0519

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5J8A|1|CA|C|1833
5J8A|1|CA|U|1834
5J8A|1|CA|2MG|1835
*
5J8A|1|CA|C|1905
5J8A|1|CA|G|1906
*
5J8A|1|CA|C|1924
5J8A|1|CA|C|1925
5J8A|1|CA|U|1926
5J8A|1|CA|A|1927
5J8A|1|CA|A|1928
5J8A|1|CA|G|1929
5J8A|1|CA|G|1930
5J8A|1|CA|U|1931
5J8A|1|CA|A|1932
5J8A|1|CA|G|1933
*
5J8A|1|CA|C|1967
5J8A|1|CA|G|1968
5J8A|1|CA|A|1969
5J8A|1|CA|A|1970
5J8A|1|CA|U|1971
5J8A|1|CA|G|1972

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2