J4_5J8A_020
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8A_020 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.0212
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J8A|1|DA|C|601
5J8A|1|DA|A|602
5J8A|1|DA|A|603
5J8A|1|DA|G|604
*
5J8A|1|DA|C|624
5J8A|1|DA|G|625
5J8A|1|DA|A|626
5J8A|1|DA|A|627
5J8A|1|DA|G|628
*
5J8A|1|DA|C|635
5J8A|1|DA|G|636
5J8A|1|DA|A|637
5J8A|1|DA|G|638
*
5J8A|1|DA|C|650
5J8A|1|DA|G|651
5J8A|1|DA|U|652
5J8A|1|DA|U|653
5J8A|1|DA|A|654
5J8A|1|DA|A|655
5J8A|1|DA|G|656
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D4
- 50S ribosomal protein L35
- Chain DE
- 50S ribosomal protein L4
- Chain DM
- 50S ribosomal protein L15
Coloring options: