J4_5J8A_022
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5J8A|1|DA|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8A_022 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.0231
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8A|1|DA|G|1310
5J8A|1|DA|G|1311
5J8A|1|DA|U|1312
5J8A|1|DA|U|1313
5J8A|1|DA|C|1314
*
5J8A|1|DA|G|1338
5J8A|1|DA|G|1339
5J8A|1|DA|U|1340
5J8A|1|DA|G|1341
5J8A|1|DA|A|1342
5J8A|1|DA|G|1343
*
5J8A|1|DA|C|1404
5J8A|1|DA|U|1405
*
5J8A|1|DA|A|1597
5J8A|1|DA|A|1598
5J8A|1|DA|U|1599
5J8A|1|DA|C|1600
5J8A|1|DA|G|1601
5J8A|1|DA|U|1602
5J8A|1|DA|A|1603
5J8A|1|DA|C|1604
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L34
- Chain DU
- 50S ribosomal protein L23
Coloring options: