J4_5J91_009

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5J91|1|CA|U|653, 5J91|1|CA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J91_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0418

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5J91|1|CA|C|601
5J91|1|CA|A|602
5J91|1|CA|A|603
5J91|1|CA|G|604
*
5J91|1|CA|C|624
5J91|1|CA|G|625
5J91|1|CA|A|626
5J91|1|CA|A|627
5J91|1|CA|G|628
*
5J91|1|CA|C|635
5J91|1|CA|G|636
5J91|1|CA|A|637
5J91|1|CA|G|638
*
5J91|1|CA|C|650
5J91|1|CA|G|651
5J91|1|CA|U|652
5J91|1|CA|U|653
5J91|1|CA|A|654
5J91|1|CA|A|655
5J91|1|CA|G|656

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15