J4_5J91_026

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5J91|1|DA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J91_026 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0247

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5J91|1|DA|C|1833
5J91|1|DA|U|1834
5J91|1|DA|2MG|1835
*
5J91|1|DA|C|1905
5J91|1|DA|G|1906
*
5J91|1|DA|C|1924
5J91|1|DA|C|1925
5J91|1|DA|U|1926
5J91|1|DA|A|1927
5J91|1|DA|A|1928
5J91|1|DA|G|1929
5J91|1|DA|G|1930
5J91|1|DA|U|1931
5J91|1|DA|A|1932
5J91|1|DA|G|1933
*
5J91|1|DA|C|1967
5J91|1|DA|G|1968
5J91|1|DA|A|1969
5J91|1|DA|A|1970
5J91|1|DA|U|1971
5J91|1|DA|G|1972

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2