J4_5JC9_009

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5JC9|1|CA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JC9_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0462

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5JC9|1|CA|C|601
5JC9|1|CA|A|602
5JC9|1|CA|A|603
5JC9|1|CA|G|604
*
5JC9|1|CA|C|624
5JC9|1|CA|G|625
5JC9|1|CA|A|626
5JC9|1|CA|A|627
5JC9|1|CA|G|628
*
5JC9|1|CA|C|635
5JC9|1|CA|G|636
5JC9|1|CA|A|637
5JC9|1|CA|G|638
*
5JC9|1|CA|C|650
5JC9|1|CA|G|651
5JC9|1|CA|U|652
5JC9|1|CA|U|653
5JC9|1|CA|A|654
5JC9|1|CA|A|655
5JC9|1|CA|G|656

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15