J4_5JC9_022

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5JC9|1|DA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JC9_022 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0221

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5JC9|1|DA|G|1310
5JC9|1|DA|G|1311
5JC9|1|DA|U|1312
5JC9|1|DA|U|1313
5JC9|1|DA|C|1314
*
5JC9|1|DA|G|1338
5JC9|1|DA|G|1339
5JC9|1|DA|U|1340
5JC9|1|DA|G|1341
5JC9|1|DA|A|1342
5JC9|1|DA|G|1343
*
5JC9|1|DA|C|1404
5JC9|1|DA|U|1405
*
5JC9|1|DA|A|1597
5JC9|1|DA|A|1598
5JC9|1|DA|U|1599
5JC9|1|DA|C|1600
5JC9|1|DA|G|1601
5JC9|1|DA|U|1602
5JC9|1|DA|A|1603
5JC9|1|DA|C|1604

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DU

50S ribosomal protein L23