J4_5JC9_026

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5JC9|1|DA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JC9_026 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0309

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5JC9|1|DA|C|1833
5JC9|1|DA|U|1834
5JC9|1|DA|2MG|1835
*
5JC9|1|DA|C|1905
5JC9|1|DA|G|1906
*
5JC9|1|DA|C|1924
5JC9|1|DA|C|1925
5JC9|1|DA|U|1926
5JC9|1|DA|A|1927
5JC9|1|DA|A|1928
5JC9|1|DA|G|1929
5JC9|1|DA|G|1930
5JC9|1|DA|U|1931
5JC9|1|DA|A|1932
5JC9|1|DA|G|1933
*
5JC9|1|DA|C|1967
5JC9|1|DA|G|1968
5JC9|1|DA|A|1969
5JC9|1|DA|A|1970
5JC9|1|DA|U|1971
5JC9|1|DA|G|1972

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2