J4_5JPQ_002

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CAUUAAAUCAGUUAU*AUUUCUGCC*GUAACG*CGG

Length

33 nucleotides

Bulged bases

5JPQ|1|2|A|359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|C|99
5JPQ|1|2|A|100
5JPQ|1|2|U|101
5JPQ|1|2|U|102
5JPQ|1|2|A|103
5JPQ|1|2|A|104
5JPQ|1|2|A|105
5JPQ|1|2|U|106
5JPQ|1|2|C|107
5JPQ|1|2|A|108
5JPQ|1|2|G|109
5JPQ|1|2|U|110
5JPQ|1|2|U|111
5JPQ|1|2|A|112
5JPQ|1|2|U|113
*
5JPQ|1|2|A|301
5JPQ|1|2|U|302
5JPQ|1|2|U|303
5JPQ|1|2|U|304
5JPQ|1|2|C|305
5JPQ|1|2|U|306
5JPQ|1|2|G|307
5JPQ|1|2|C|308
5JPQ|1|2|C|309
*
5JPQ|1|2|G|357
5JPQ|1|2|U|358
5JPQ|1|2|A|359
5JPQ|1|2|A|360
5JPQ|1|2|C|361
5JPQ|1|2|G|362
*
5JPQ|1|2|C|382
5JPQ|1|2|G|383
5JPQ|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain p

eS4

Chain t

eS8

Chain y

uS17