J4_5JTE_009

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5JTE|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JTE_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1473

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5JTE|1|BA|C|601
5JTE|1|BA|A|602
5JTE|1|BA|A|603
5JTE|1|BA|G|604
*
5JTE|1|BA|C|624
5JTE|1|BA|G|625
5JTE|1|BA|A|626
5JTE|1|BA|A|627
5JTE|1|BA|G|628
*
5JTE|1|BA|C|635
5JTE|1|BA|G|636
5JTE|1|BA|A|637
5JTE|1|BA|G|638
*
5JTE|1|BA|C|650
5JTE|1|BA|G|651
5JTE|1|BA|U|652
5JTE|1|BA|U|653
5JTE|1|BA|A|654
5JTE|1|BA|A|655
5JTE|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15