J4_5JTE_014

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5JTE|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JTE_014 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.097

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5JTE|1|BA|C|1833
5JTE|1|BA|U|1834
5JTE|1|BA|G|1835
*
5JTE|1|BA|C|1905
5JTE|1|BA|G|1906
*
5JTE|1|BA|C|1924
5JTE|1|BA|C|1925
5JTE|1|BA|U|1926
5JTE|1|BA|A|1927
5JTE|1|BA|A|1928
5JTE|1|BA|G|1929
5JTE|1|BA|G|1930
5JTE|1|BA|U|1931
5JTE|1|BA|A|1932
5JTE|1|BA|G|1933
*
5JTE|1|BA|C|1967
5JTE|1|BA|G|1968
5JTE|1|BA|A|1969
5JTE|1|BA|A|1970
5JTE|1|BA|U|1971
5JTE|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2