J4_5JU8_004
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- G(4SU)AG*UAC*GGG(7MG)UCGC*G(PSU)C
- Length
- 18 nucleotides
- Bulged bases
- 5JU8|1|AX|4SU|8, 5JU8|1|AX|U|47, 5JU8|1|AX|C|48
- QA status
- Modified nucleotides: 4SU, 7MG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JU8|1|AX|G|7
5JU8|1|AX|4SU|8
5JU8|1|AX|A|9
5JU8|1|AX|G|10
*
5JU8|1|AX|U|25
5JU8|1|AX|A|26
5JU8|1|AX|C|27
*
5JU8|1|AX|G|43
5JU8|1|AX|G|44
5JU8|1|AX|G|45
5JU8|1|AX|7MG|46
5JU8|1|AX|U|47
5JU8|1|AX|C|48
5JU8|1|AX|G|49
5JU8|1|AX|C|50
*
5JU8|1|AX|G|64
5JU8|1|AX|PSU|65
5JU8|1|AX|C|66
Current chains
- Chain AX
- P-site tRNA Aspartate
Nearby chains
- Chain AM
- 30S ribosomal protein S13
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BM
- 50S ribosomal protein L16
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