J4_5JU8_008

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5JU8|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JU8_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1453

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5JU8|1|BA|C|601
5JU8|1|BA|A|602
5JU8|1|BA|A|603
5JU8|1|BA|G|604
*
5JU8|1|BA|C|624
5JU8|1|BA|G|625
5JU8|1|BA|A|626
5JU8|1|BA|A|627
5JU8|1|BA|G|628
*
5JU8|1|BA|C|635
5JU8|1|BA|G|636
5JU8|1|BA|A|637
5JU8|1|BA|G|638
*
5JU8|1|BA|C|650
5JU8|1|BA|G|651
5JU8|1|BA|U|652
5JU8|1|BA|U|653
5JU8|1|BA|A|654
5JU8|1|BA|A|655
5JU8|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15