J4_5JU8_013

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5JU8|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JU8_013 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0946

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5JU8|1|BA|C|1833
5JU8|1|BA|U|1834
5JU8|1|BA|G|1835
*
5JU8|1|BA|C|1905
5JU8|1|BA|G|1906
*
5JU8|1|BA|C|1924
5JU8|1|BA|C|1925
5JU8|1|BA|U|1926
5JU8|1|BA|A|1927
5JU8|1|BA|A|1928
5JU8|1|BA|G|1929
5JU8|1|BA|G|1930
5JU8|1|BA|U|1931
5JU8|1|BA|A|1932
5JU8|1|BA|G|1933
*
5JU8|1|BA|C|1967
5JU8|1|BA|G|1968
5JU8|1|BA|A|1969
5JU8|1|BA|A|1970
5JU8|1|BA|U|1971
5JU8|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2