J4_5JUU_005
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGUAGUAGCAAAUAU*AG*UGAU*AGCGAAACC
- Length
- 30 nucleotides
- Bulged bases
- 5JUU|1|B|A|1452, 5JUU|1|B|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUU|1|B|G|1443
5JUU|1|B|G|1444
5JUU|1|B|U|1445
5JUU|1|B|A|1446
5JUU|1|B|G|1447
5JUU|1|B|U|1448
5JUU|1|B|A|1449
5JUU|1|B|G|1450
5JUU|1|B|C|1451
5JUU|1|B|A|1452
5JUU|1|B|A|1453
5JUU|1|B|A|1454
5JUU|1|B|U|1455
5JUU|1|B|A|1456
5JUU|1|B|U|1457
*
5JUU|1|B|A|1475
5JUU|1|B|G|1476
*
5JUU|1|B|U|1877
5JUU|1|B|G|1878
5JUU|1|B|A|1879
5JUU|1|B|U|1880
*
5JUU|1|B|A|2352
5JUU|1|B|G|2353
5JUU|1|B|C|2354
5JUU|1|B|G|2355
5JUU|1|B|A|2356
5JUU|1|B|A|2357
5JUU|1|B|A|2358
5JUU|1|B|C|2359
5JUU|1|B|C|2360
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain H
- uL4 (yeast L4)
- Chain IA
- eL31 (yeast L31)
- Chain U
- uL22 (yeast L17)
- Chain W
- eL19 (yeast L19)
Coloring options: