3D structure

PDB id
5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGUAGUAGCAAAUAU*AG*UGAU*AGCGAAACC
Length
30 nucleotides
Bulged bases
5JUU|1|B|A|1452, 5JUU|1|B|U|1455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JUU|1|B|G|1443
5JUU|1|B|G|1444
5JUU|1|B|U|1445
5JUU|1|B|A|1446
5JUU|1|B|G|1447
5JUU|1|B|U|1448
5JUU|1|B|A|1449
5JUU|1|B|G|1450
5JUU|1|B|C|1451
5JUU|1|B|A|1452
5JUU|1|B|A|1453
5JUU|1|B|A|1454
5JUU|1|B|U|1455
5JUU|1|B|A|1456
5JUU|1|B|U|1457
*
5JUU|1|B|A|1475
5JUU|1|B|G|1476
*
5JUU|1|B|U|1877
5JUU|1|B|G|1878
5JUU|1|B|A|1879
5JUU|1|B|U|1880
*
5JUU|1|B|A|2352
5JUU|1|B|G|2353
5JUU|1|B|C|2354
5JUU|1|B|G|2355
5JUU|1|B|A|2356
5JUU|1|B|A|2357
5JUU|1|B|A|2358
5JUU|1|B|C|2359
5JUU|1|B|C|2360

Current chains

Chain B
25S ribosomal RNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain H
uL4 (yeast L4)
Chain IA
eL31 (yeast L31)
Chain U
uL22 (yeast L17)
Chain W
eL19 (yeast L19)

Coloring options:

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