J4_5JUU_006

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JUU_006 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.2362

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5JUU|1|B|G|1674
5JUU|1|B|G|1675
*
5JUU|1|B|C|1693
5JUU|1|B|U|1694
*
5JUU|1|B|A|1752
5JUU|1|B|G|1753
*
5JUU|1|B|U|1772
5JUU|1|B|C|1773

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)

Chain PA

eL38 (yeast L38)

Chain W

eL19 (yeast L19)

Chain Z

eL22 (yeast L22)