3D structure

PDB id
5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUAAG*UUGAU*ACC*GUG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5JUU_009 not in the Motif Atlas
Homologous match to J4_8C3A_008
Geometric discrepancy: 0.14
The information below is about J4_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5JUU|1|B|C|2654
5JUU|1|B|U|2655
5JUU|1|B|A|2656
5JUU|1|B|A|2657
5JUU|1|B|G|2658
*
5JUU|1|B|U|2712
5JUU|1|B|U|2713
5JUU|1|B|G|2714
5JUU|1|B|A|2715
5JUU|1|B|U|2716
*
5JUU|1|B|A|2740
5JUU|1|B|C|2741
5JUU|1|B|C|2742
*
5JUU|1|B|G|2751
5JUU|1|B|U|2752
5JUU|1|B|G|2753

Current chains

Chain B
25S ribosomal RNA

Nearby chains

Chain GA
eL29 (yeast L29)
Chain I
uL18 (yeast L5)
Chain TA
eL42 (yeast L42)
Chain Y
eL21 (yeast L21)

Coloring options:


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