J4_5JVH_001
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGU*GGCGGCAUUAG
- Length
- 25 nucleotides
- Bulged bases
- 5JVH|1|X|C|664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JVH_001 not in the Motif Atlas
- Homologous match to J4_7A0S_003
- Geometric discrepancy: 0.4142
- The information below is about J4_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98739.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5JVH|1|X|C|611
5JVH|1|X|G|612
5JVH|1|X|A|613
5JVH|1|X|G|614
*
5JVH|1|X|C|635
5JVH|1|X|G|636
5JVH|1|X|G|637
5JVH|1|X|A|638
5JVH|1|X|G|639
*
5JVH|1|X|C|646
5JVH|1|X|G|647
5JVH|1|X|A|648
5JVH|1|X|G|649
5JVH|1|X|U|650
*
5JVH|1|X|G|659
5JVH|1|X|G|660
5JVH|1|X|C|661
5JVH|1|X|G|662
5JVH|1|X|G|663
5JVH|1|X|C|664
5JVH|1|X|A|665
5JVH|1|X|U|666
5JVH|1|X|U|667
5JVH|1|X|A|668
5JVH|1|X|G|669
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
Coloring options: